harish0201 / Analyses_PipelinesLinks
Analyses pipelines that I use for my work
☆12Updated 4 years ago
Alternatives and similar repositories for Analyses_Pipelines
Users that are interested in Analyses_Pipelines are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆93Updated 2 weeks ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆32Updated 8 months ago
- Genome Annotation Pipeline☆43Updated last year
- k-mer learning materials☆83Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- ☆89Updated 2 months ago
- paml documentation and tutorials☆68Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Best practices and workflow for genome annotation☆79Updated 9 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Neural network classification of TE☆97Updated 4 months ago
- Synteny Imager☆65Updated last month
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆66Updated 2 weeks ago
- This is the standalone version of the EviAnn pipeline☆136Updated this week
- Analysis of convergence between organismal traits and DNA/protein sequences☆62Updated last month
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated last week
- NLR-Annotator upload☆76Updated 2 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆36Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated 2 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Updated 3 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago
- Multi-genome synteny block visualization tool☆52Updated last week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆111Updated 2 weeks ago