Analyses pipelines that I use for my work
☆12Jul 7, 2021Updated 5 years ago
Alternatives and similar repositories for Analyses_Pipelines
Users that are interested in Analyses_Pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- ☆13Oct 7, 2024Updated last year
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- scripts☆20Nov 2, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 9 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Apr 30, 2026Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Jul 13, 2026Updated last week
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 7 months ago
- ☆14Jul 13, 2020Updated 6 years ago
- Re-usable functions for describing the responses to a public consultation or call for evidence.☆12Jan 24, 2022Updated 4 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 3 weeks ago
- ☆11Mar 10, 2024Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated last month
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆174Mar 16, 2026Updated 4 months ago
- 现代化的跨平台 SSH 终端客户端，基于 Tauri v2 构建☆15May 29, 2026Updated last month
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Jun 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Sep 4, 2025Updated 10 months ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Advanced R programming course at EMBL, 3-4 April 2017☆11Apr 5, 2017Updated 9 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- A mini course on biological data analysis☆10Jan 16, 2025Updated last year
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago