harish0201 / Analyses_PipelinesLinks
Analyses pipelines that I use for my work
☆12Updated 4 years ago
Alternatives and similar repositories for Analyses_Pipelines
Users that are interested in Analyses_Pipelines are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆73Updated 10 months ago
- ☆76Updated 3 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- This is the standalone version of the EviAnn pipeline☆108Updated last week
- Analysis of convergence between organismal traits and DNA/protein sequences☆56Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- paml documentation and tutorials☆60Updated 2 months ago
- Synteny Imager☆63Updated 2 weeks ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆54Updated 2 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- NLR-Annotator upload☆69Updated 2 years ago
- Neural network classification of TE☆92Updated 2 months ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆75Updated last week
- ☆27Updated 4 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆75Updated this week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 2 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- ☆9Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 3 weeks ago
- RepeatIdentifier☆67Updated 4 months ago
- k-mer learning materials☆73Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆87Updated last year
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 4 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago