Software for predicting library complexity and genome coverage in high-throughput sequencing.
☆94Dec 24, 2025Updated 4 months ago
Alternatives and similar repositories for preseq
Users that are interested in preseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for estimating library complexity☆13Sep 4, 2022Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated last month
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Aug 8, 2025Updated 8 months ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last week
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆759Jul 23, 2025Updated 9 months ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 2 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆89Updated this week
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 6 months ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- ☆47Mar 18, 2025Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆93Apr 30, 2021Updated 4 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70May 20, 2025Updated 11 months ago
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Apr 16, 2026Updated last week
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆476Apr 10, 2026Updated 2 weeks ago
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 3 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.