smithlabcode / preseqLinks
Software for predicting library complexity and genome coverage in high-throughput sequencing.
☆85Updated 8 months ago
Alternatives and similar repositories for preseq
Users that are interested in preseq are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- BigWig and BAM utilities☆96Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ☆122Updated 7 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 4 months ago
- ☆78Updated 11 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- PHAST☆73Updated 3 weeks ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated this week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago