smithlabcode / preseq
Software for predicting library complexity and genome coverage in high-throughput sequencing.
☆82Updated 6 months ago
Alternatives and similar repositories for preseq:
Users that are interested in preseq are comparing it to the libraries listed below
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- BigWig and BAM utilities☆96Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated last week
- Same species annotation lift over pipeline.☆97Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆78Updated 11 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- PHAST☆73Updated this week
- ☆120Updated 5 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 8 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Next-Generation Sequencing(NGS) toolkits.☆45Updated 8 years ago