smithlabcode / preseqLinks
Software for predicting library complexity and genome coverage in high-throughput sequencing.
☆94Updated last month
Alternatives and similar repositories for preseq
Users that are interested in preseq are comparing it to the libraries listed below
Sorting:
- Tip and tricks for BAM files☆86Updated 7 years ago
- BigWig and BAM utilities☆102Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 8 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tools for analyzing DNA methylation data☆44Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆122Updated 6 months ago
- reference-free transcriptome assembly for short and long reads☆108Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- ☆96Updated 3 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆25Updated 7 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Ultraperformant reimplementation of SICER☆58Updated 2 months ago
- Precision HLA typing from next-generation sequencing data☆78Updated this week
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year