ccdmb / predectorLinks
Effector prediction pipeline based on protein properties.
☆14Updated 3 months ago
Alternatives and similar repositories for predector
Users that are interested in predector are comparing it to the libraries listed below
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆72Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆77Updated 3 weeks ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆81Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 6 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated 2 months ago
- ☆23Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated this week
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated 2 years ago
- ☆72Updated 4 months ago
- Reorients assembled microbial sequences☆128Updated last month
- Bioinformatics tool for Locus Visualisation☆124Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 5 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆51Updated last year
- ☆58Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago