ccdmb / predector
Effector prediction pipeline based on protein properties.
☆11Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for predector
- ☆16Updated 4 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- Automatic Assembly For The Fungi☆19Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 9 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated last month
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Updated last month
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- A program for detection of tRNA genes☆56Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated last month
- ☆56Updated last month
- MAG Circularization Method☆33Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- A toolkit for prokaryotic comparative genomics☆25Updated 2 months ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆20Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆26Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 5 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- ☆27Updated 4 years ago