LUMC / ribosome-profiling-analysis-framework
Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
☆12Updated last year
Alternatives and similar repositories for ribosome-profiling-analysis-framework:
Users that are interested in ribosome-profiling-analysis-framework are comparing it to the libraries listed below
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Genomic Association Tester☆30Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- ☆78Updated 10 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- ☆45Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆30Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- Tools for analyzing DNA methylation data☆36Updated last week
- CNV screening and annotation tool☆24Updated 8 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆57Updated 8 months ago
- STARRPeaker: STARR-seq peak caller☆15Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago