ucdavis-bioinformatics / assemblathon2-analysisLinks
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
☆23Updated 4 years ago
Alternatives and similar repositories for assemblathon2-analysis
Users that are interested in assemblathon2-analysis are comparing it to the libraries listed below
Sorting:
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆62Updated 2 months ago
- ☆35Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- ☆49Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 4 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 6 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 2 years ago
- ☆36Updated 7 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- k-mer counting software☆39Updated 3 years ago
- Specifications for PacBio® native file formats☆31Updated 10 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago