A Quality Control filter and parser for NCBI BLAST XML results.
☆17Aug 21, 2020Updated 5 years ago
Alternatives and similar repositories for blast-QC
Users that are interested in blast-QC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆19Feb 15, 2026Updated last month
- Visualization tool for (meta)genome assembly graphs☆44Updated this week
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- ☆10Dec 17, 2025Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆16Sep 27, 2022Updated 3 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated 10 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- ☆28Apr 9, 2025Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- This package contains the BLAST Viewer Tool.☆13Apr 7, 2023Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- ☆10May 14, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆22Jun 21, 2023Updated 2 years ago
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- ☆20Mar 28, 2017Updated 8 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Jan 22, 2025Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- ☆32Feb 24, 2026Updated last month
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- ☆10Dec 28, 2023Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- ☆13Dec 3, 2024Updated last year
- ☆13Feb 14, 2023Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago