torkian / blast-QCLinks
A Quality Control filter and parser for NCBI BLAST XML results.
☆17Updated 4 years ago
Alternatives and similar repositories for blast-QC
Users that are interested in blast-QC are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆16Updated last year
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 9 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 4 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- Find Unique genomic Regions☆30Updated 2 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆18Updated 4 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated 3 weeks ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- ☆16Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Rapid and accurate ancestry inference using SNVs.☆19Updated 2 weeks ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- ☆15Updated 5 years ago
- AncestralClust☆11Updated last year
- ☆20Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 2 months ago
- Convert genbank files to a swath of other formats☆18Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 6 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago