torkian / blast-QCLinks
A Quality Control filter and parser for NCBI BLAST XML results.
☆17Updated 4 years ago
Alternatives and similar repositories for blast-QC
Users that are interested in blast-QC are comparing it to the libraries listed below
Sorting:
- ☆16Updated last week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆28Updated last year
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- ORF prediction using python☆11Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- ☆28Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated last month
- Read, parse and operate different multiple input file formats with OpenVariant☆12Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- cgat-apps repository☆34Updated 3 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆36Updated 4 months ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- ☆11Updated 3 weeks ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- A pipeline creation tool using Snakemake☆11Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆53Updated 2 weeks ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 7 months ago
- ☆21Updated 3 months ago
- Bash scripts and data used in pantranscriptomic paper☆22Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago