Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly
☆42Apr 16, 2026Updated 5 months ago
Alternatives and similar repositories for PIGA
Users that are interested in PIGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The analysis of the 1KCP☆17Dec 3, 2025Updated 10 months ago
- Visualize 3D ST data in Jupyter☆26Aug 21, 2026Updated last month
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆11Aug 13, 2026Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆23May 4, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆52Jun 27, 2026Updated 3 months ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆23Dec 2, 2025Updated 10 months ago
- A TUI application for monitoring and managing SLURM jobs.☆109Nov 24, 2025Updated 10 months ago
- Mosaic Genome Assembler☆29Sep 14, 2026Updated 3 weeks ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 11 months ago
- ☆23Sep 22, 2026Updated 2 weeks ago
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆223Updated this week
- ☆33Jul 13, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Sep 4, 2024Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆27Sep 15, 2025Updated last year
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆46Feb 20, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- Methylation analysis pipeline for genome graph☆16May 25, 2025Updated last year
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- tandemtwister: Tandem repeat genotyping tool☆23Feb 1, 2026Updated 8 months ago
- ☆21Dec 13, 2024Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- ☆22Jul 21, 2026Updated 2 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Open Human Genome Library☆70Dec 22, 2025Updated 9 months ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆21Updated this week
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆18Aug 6, 2026Updated 2 months ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated 2 months ago
- Successor of bwa-mem for short-read alignment☆352Oct 1, 2026Updated last week
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Fast population genetics clustering.☆36Sep 1, 2026Updated last month