Alternatives and similar repositories for GENzyme

Users that are interested in GENzyme are comparing it to the libraries listed below

• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 10 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆81Updated 5 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆68Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated 2 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆88Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆68Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆52Updated 3 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 3 months ago
• bunzela / AIzymes
  ☆65Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆47Updated last year
• baker-laboratory / CA_RFDiffusion
  ☆76Updated 7 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆60Updated 7 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated last year
• Alex-Abrudan / DynamicMPNN
  ☆41Updated 5 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆132Updated 2 months ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• danny305 / StabilityOracle
  ☆29Updated 3 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated 2 years ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 7 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated 2 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆69Updated 9 months ago
• regeneron-mpds / propermab
  ☆43Updated 9 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆45Updated 5 months ago