Alternatives and similar repositories for EnzymeFlow:

Users that are interested in EnzymeFlow are comparing it to the libraries listed below

• levinthal / Pallatom
  ☆91Updated 5 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆46Updated 4 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆68Updated 5 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆62Updated last month
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆112Updated 2 weeks ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆88Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆156Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆91Updated 8 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆57Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• wengong-jin / DSMBind
  ☆85Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆97Updated 6 months ago
• zhanghaicang / carbonmatrix_public
  ☆111Updated 3 weeks ago
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆80Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆77Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆73Updated 9 months ago
• jproney / AF2Rank
  ☆100Updated 2 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆56Updated 2 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆84Updated 2 weeks ago
• ikalvet / heme_binder_diffusion
  ☆119Updated 6 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆49Updated this week
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆103Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆111Updated 4 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆39Updated 4 months ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• ml4bio / RhoDesign
  Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.
  ☆35Updated 5 months ago
• sokrypton / af2bind
  ☆49Updated 3 weeks ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆115Updated last week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆53Updated last month