Alternatives and similar repositories for af2seq:

Users that are interested in af2seq are comparing it to the libraries listed below

• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆35Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated 4 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• ELELAB / RosettaDDGPrediction
  ☆58Updated 2 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆38Updated 8 months ago
• Kuhlman-Lab / evopro
  ☆72Updated this week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆45Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 2 months ago
• sokrypton / af2bind
  ☆46Updated 3 weeks ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆27Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆52Updated 9 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆20Updated 2 weeks ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆37Updated last week
• danny305 / StabilityOracle
  ☆24Updated 7 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆40Updated last month
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆76Updated last week
• cddlab / alphafold3_tools
  Toolkit for alphafold3 input and output files
  ☆59Updated this week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆54Updated last year
• PKUliujl / GeoSeqBuilder
  ☆24Updated 2 weeks ago
• skalyaanamoorthy / PSLMs
  ☆16Updated 2 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆29Updated last year
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆27Updated 5 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆69Updated 5 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆26Updated 9 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 5 months ago
• dina-lab3D / CombFold
  ☆78Updated 4 months ago
• lcbc-epfl / metal-site-prediction
  ☆38Updated last year
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆14Updated 3 weeks ago