davidekim / parametric_barrelsLinks
Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.
☆13Updated last month
Alternatives and similar repositories for parametric_barrels
Users that are interested in parametric_barrels are comparing it to the libraries listed below
Sorting:
- ☆15Updated 9 months ago
- ☆16Updated 6 months ago
- bakerlab pymol scripts☆25Updated 5 years ago
- ☆25Updated 7 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Updated 9 months ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆11Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Updated 2 years ago
- ☆29Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆35Updated last year
- DyNoPy☆11Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆46Updated 3 weeks ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated last month
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 weeks ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago
- Demos of many Rosetta applications☆20Updated 6 months ago
- Graphormer Based Protein Sequence Design☆25Updated last year
- ☆13Updated 2 years ago
- ☆32Updated 10 months ago
- Protein Sequence Evolutionary Information Language Model☆13Updated 2 years ago
- ☆26Updated 4 months ago
- ☆14Updated 2 months ago
- ☆17Updated last year
- Some scripts that I keep using over and over.☆21Updated 5 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆18Updated last month
- ☆10Updated last year
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19Updated last year
- ☆10Updated this week
- Generative diverse protein backbones by protein language model☆34Updated last month
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆25Updated last year