Fast deep learning methods for large-scale protein-protein interaction screening
☆135Aug 3, 2025Updated last year
Alternatives and similar repositories for RoseTTAFold2-PPI
Users that are interested in RoseTTAFold2-PPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PLM-interact: extending protein language models to predict protein-protein interactions.☆73Aug 29, 2025Updated last year
- ☆33Jun 1, 2024Updated 2 years ago
- Learning the language of protein-protein interactions☆155Jun 15, 2026Updated 2 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆261Jan 3, 2026Updated 7 months ago
- ☆259Feb 12, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Mar 28, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆264Mar 26, 2026Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ☆185Jul 24, 2026Updated last month
- ☆59Aug 19, 2026Updated last week
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 3 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆85Jul 28, 2026Updated last month
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 3 months ago
- ☆33Aug 27, 2025Updated last year
- ☆101Jul 9, 2026Updated last month
- ☆25Jun 10, 2026Updated 2 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆138Jan 28, 2026Updated 7 months ago
- ☆51Sep 25, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆131Oct 24, 2025Updated 10 months ago
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆66Aug 11, 2026Updated 2 weeks ago
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆130May 10, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆36Jun 10, 2026Updated 2 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 4 months ago
- A generalized computational framework for biomolecular modeling.☆443Aug 20, 2026Updated last week
- Code for ColabDock paper☆157May 1, 2025Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆281May 11, 2026Updated 3 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆56Jul 22, 2025Updated last year
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆145Jun 3, 2025Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆47May 22, 2025Updated last year
- Aligning protein generative models with experimental fitness☆145Mar 12, 2026Updated 5 months ago
- ☆84Jun 10, 2026Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week