Alternatives and similar repositories for ProBID-NET

Users that are interested in ProBID-NET are comparing it to the libraries listed below

• anirudhvenk / antibody-dpo
  ☆25Updated 6 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• davidekim / parametric_barrels
  Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.
  ☆13Updated 3 weeks ago
• Gonglab-THU / GDFold2
  ☆17Updated 11 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 8 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆34Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• RosettaCommons / demos
  Demos of many Rosetta applications
  ☆19Updated 5 months ago
• PKUliujl / GeoSeqBuilder
  ☆30Updated 10 months ago
• meilerlab / probabilities_design
  ☆15Updated 8 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated last month
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 8 months ago
• bwicky / SAPP_DMX
  ☆25Updated 4 months ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆50Updated 2 weeks ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆25Updated last year
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆44Updated last week
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 8 months ago
• bzho3923 / CPDiffusion
  ☆25Updated last year
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆18Updated last month
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated last year
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• Wublab / pythia_ppi
  PPI version of Pythia
  ☆25Updated 2 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated last month
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 9 months ago
• masoudk / AsiteDesign
  ☆13Updated 2 years ago
• bene837 / af2seq
  ☆46Updated last year