luo-group / MODIFYLinks
ML-optimized library design with improved fitness and diversity for protein engineering
☆35Updated last year
Alternatives and similar repositories for MODIFY
Users that are interested in MODIFY are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated last week
- ☆28Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆42Updated 3 weeks ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆62Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 9 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 7 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 9 months ago
- ☆23Updated 3 months ago
- Code for humanization of antibody and nanobody☆49Updated 9 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆65Updated last month
- ☆37Updated 2 weeks ago
- ☆86Updated last month
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆23Updated 5 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- bakerlab pymol scripts☆24Updated 5 years ago
- code for IDR binding paper 2025☆47Updated 6 months ago
- ☆33Updated 4 months ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆24Updated 9 months ago
- ☆44Updated 11 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆19Updated 5 months ago
- ☆70Updated 5 months ago
- ☆33Updated 2 years ago
- ☆38Updated 11 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- ☆27Updated 3 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 3 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆16Updated 5 months ago
- ☆61Updated last year
- ☆29Updated last year