ML-optimized library design with improved fitness and diversity for protein engineering
☆37Nov 5, 2025Updated 5 months ago
Alternatives and similar repositories for MODIFY
Users that are interested in MODIFY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Active Learning-Assisted Directed Evolution for Protein Engineering☆81Oct 24, 2025Updated 5 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆102Dec 10, 2025Updated 4 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 9 months ago
- Protein stability prediction using rewired protein generative models☆71Dec 25, 2025Updated 3 months ago
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ☆21Oct 31, 2024Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- VenusFSFP: Few-Shot Protein Fitness Prediction☆111Nov 18, 2025Updated 4 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- ☆33Feb 5, 2025Updated last year
- ☆27Aug 8, 2025Updated 8 months ago
- ☆28May 24, 2024Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 7 months ago
- ☆31Dec 12, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Machine learning prediction of enzyme optimum pH☆50Apr 29, 2025Updated 11 months ago
- ☆15Apr 3, 2025Updated last year
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆81Updated this week
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- ☆26Oct 8, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- ☆56Feb 16, 2026Updated last month
- ☆31Oct 7, 2025Updated 6 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 5 months ago
- ☆149Jul 16, 2025Updated 8 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆585Mar 8, 2026Updated last month
- ☆22Dec 11, 2024Updated last year
- ☆12Jun 11, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆42Jun 12, 2025Updated 10 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆63May 21, 2025Updated 10 months ago
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆77Feb 2, 2026Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 7 months ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- AlphaFold-initiated replica exchange protein docking☆91Jun 5, 2025Updated 10 months ago