luo-group / MODIFYLinks
ML-optimized library design with improved fitness and diversity for protein engineering
☆36Updated last year
Alternatives and similar repositories for MODIFY
Users that are interested in MODIFY are comparing it to the libraries listed below
Sorting:
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated last month
- ☆28Updated 8 months ago
- ☆29Updated 3 weeks ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆66Updated 3 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated 3 weeks ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Updated 9 months ago
- bakerlab pymol scripts☆25Updated 5 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 11 months ago
- ☆11Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated this week
- ☆24Updated 5 months ago
- ☆32Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆68Updated 3 months ago
- ☆35Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆21Updated 7 months ago
- Machine learning prediction of enzyme optimum pH☆47Updated 6 months ago
- PPI version of Pythia☆21Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- ☆37Updated 6 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆45Updated this week
- ☆15Updated last year
- Code for humanization of antibody and nanobody☆58Updated 2 months ago
- ☆39Updated last year
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆12Updated 6 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆24Updated 2 months ago
- ☆42Updated 2 months ago
- ☆37Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆25Updated 7 months ago
- ☆44Updated last year
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆24Updated 11 months ago