ML-optimized library design with improved fitness and diversity for protein engineering
☆37Nov 5, 2025Updated 8 months ago
Alternatives and similar repositories for MODIFY
Users that are interested in MODIFY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 8 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated last year
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆114Apr 15, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- ☆21Oct 31, 2024Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 8 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- ☆32Feb 5, 2025Updated last year
- Protein stability prediction using rewired protein generative models☆86Updated this week
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated 10 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆30May 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆31Dec 12, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- code and source data for de novo design of Kemp elimination paper☆26Sep 18, 2025Updated 10 months ago
- ☆26Dec 2, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- ☆26Oct 8, 2024Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆49Nov 4, 2025Updated 8 months ago
- ☆32Oct 7, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆57Apr 15, 2026Updated 3 months ago
- ☆40Jun 17, 2025Updated last year
- ☆151Jul 16, 2025Updated last year
- ☆34Feb 4, 2026Updated 5 months ago
- Official repository of GENzyme☆65Nov 29, 2024Updated last year
- ☆30Aug 8, 2025Updated 11 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆613Mar 8, 2026Updated 4 months ago
- ☆13Jun 11, 2025Updated last year
- Complete saturation mutagenesis of a protein using ESM☆18Feb 20, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆65May 21, 2025Updated last year
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆94Jun 15, 2026Updated last month
- AlphaFold-initiated replica exchange protein docking☆92Jun 5, 2025Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆70May 28, 2026Updated last month
- ☆43Jun 12, 2025Updated last year
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆80Jul 8, 2026Updated 2 weeks ago