Alternatives and similar repositories for MODIFY

Users that are interested in MODIFY are comparing it to the libraries listed below

• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated 3 weeks ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆66Updated 3 months ago
• danny305 / StabilityOracle
  ☆29Updated this week
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆45Updated 10 months ago
• anirudhvenk / antibody-dpo
  ☆24Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆66Updated 10 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• RP3Net / RP3Net
  ☆11Updated 4 months ago
• KhondamirRustamov / FoldCraft
  ☆41Updated last month
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆40Updated 2 months ago
• bene837 / af2seq
  ☆44Updated last year
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 7 months ago
• bzho3923 / ProtLGN
  ☆31Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆35Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆45Updated 5 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆56Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆38Updated this week
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 10 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆34Updated last week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 6 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆17Updated 6 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆24Updated 7 months ago