Alternatives and similar repositories for heme_binder_diffusion

Users that are interested in heme_binder_diffusion are comparing it to the libraries listed below

• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆204Updated 3 months ago
• yehlincho / BoltzDesign1
  ☆220Updated 3 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆69Updated last month
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆191Updated last week
• Kortemme-Lab / flex_ddG_tutorial
  ☆130Updated 3 years ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆234Updated 3 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆148Updated 6 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 3 years ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 5 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆139Updated 7 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆165Updated last month
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆164Updated 9 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆148Updated 2 years ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆155Updated this week
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆188Updated last month
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆245Updated 3 weeks ago
• levinthal / Pallatom
  ☆126Updated 5 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated 2 weeks ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆164Updated last month
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆164Updated last year
• ai4protein / Pro-Prime
  ☆73Updated 2 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆126Updated 4 months ago
• ELELAB / RosettaDDGPrediction
  ☆81Updated 9 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆113Updated 7 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆157Updated 3 weeks ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆59Updated 9 months ago
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆326Updated this week
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆122Updated 2 years ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆107Updated 3 weeks ago
• Kuhlman-Lab / evopro
  ☆90Updated last month