zaixizhang / PocketFlowLinks
Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"
☆19Updated 6 months ago
Alternatives and similar repositories for PocketFlow
Users that are interested in PocketFlow are comparing it to the libraries listed below
Sorting:
- ☆25Updated 6 months ago
- ☆39Updated 6 months ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆14Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆52Updated last year
- ☆22Updated last year
- ☆25Updated last year
- ☆27Updated last year
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆22Updated 6 months ago
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- ☆19Updated 3 weeks ago
- Reaction-Conditioned Virtual Screening of Enzymes☆40Updated 6 months ago
- Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineer…☆20Updated last month
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆35Updated 4 months ago
- Prediction of Antibody CDR and protein loop flexibility☆17Updated 2 months ago
- ☆39Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆51Updated last week
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆54Updated last year
- Official repository of GENzyme☆58Updated last year
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆40Updated 5 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆44Updated 4 months ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆25Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- ☆35Updated last year
- ☆19Updated 4 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Updated 9 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆78Updated 4 months ago