zaixizhang / PocketFlowLinks
Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"
☆16Updated 3 months ago
Alternatives and similar repositories for PocketFlow
Users that are interested in PocketFlow are comparing it to the libraries listed below
Sorting:
- ☆23Updated 3 months ago
- ☆36Updated 2 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- ☆21Updated 9 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated last year
- ☆24Updated 10 months ago
- IDPFold test version☆21Updated 11 months ago
- ☆27Updated 10 months ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆14Updated last year
- ☆35Updated 10 months ago
- A Unified Evaluation Suite for Protein Design☆61Updated 2 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆70Updated 2 weeks ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆43Updated 8 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆23Updated 5 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 9 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆34Updated last week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆46Updated 7 months ago
- Code for humanization of antibody and nanobody☆49Updated 9 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- P450Diffusion: A tool for designing P450 sequences based on diffusion model☆24Updated last year
- Official repository of GENzyme☆54Updated 9 months ago
- ☆28Updated 8 months ago
- Graphormer Based Protein Sequence Design☆25Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆36Updated 2 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- workflow used to prepare PPB-Affinity database☆27Updated last year
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆34Updated 10 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆54Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 9 months ago