Galaxeee / TedSimLinks
☆10Updated 3 years ago
Alternatives and similar repositories for TedSim
Users that are interested in TedSim are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆33Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- ☆39Updated 5 months ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- R package IReNA☆29Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Functional Inference of Gene Regulation☆51Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆62Updated last month
- Single-cell Case Control Analysis☆52Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- ☆53Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- ☆37Updated last year
- ☆39Updated 4 years ago