felixhorns / jungleLinks
☆12Updated 5 years ago
Alternatives and similar repositories for jungle
Users that are interested in jungle are comparing it to the libraries listed below
Sorting:
- Create cisTarget databases☆55Updated 7 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆19Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- ☆37Updated 10 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆39Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- ☆44Updated 2 months ago
- ☆26Updated 2 years ago
- ☆17Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- ☆10Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Trajectory Inference Based on SNP information.☆24Updated last year