felixhorns / jungle

Related projects ⓘ

Alternatives and complementary repositories for jungle

• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated this week
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆43Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 8 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆30Updated last month
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆32Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆11Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆24Updated 6 months ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• fmicompbio / adv_singlecell_2022
  Material for the "Advanced topics in single-cell analysis" course (2022 edition)
  ☆16Updated 2 years ago
• zhouzilu / DENDRO
  Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
  ☆34Updated 4 years ago
• lcmmichielsen / scHPL
  ☆34Updated 6 months ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆32Updated 3 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆24Updated last month
• ventolab / cellphonedb-data
  ☆18Updated 10 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆37Updated 4 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆20Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 10 months ago
• LungCellAtlas / mapping_data_to_the_HLCA
  Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
  ☆19Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆29Updated last year
• dgrun / FateID
  R package for the inference of cell fate bias from single-cell RNA-seq data.
  ☆22Updated 2 years ago
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆20Updated 3 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆63Updated 6 months ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆33Updated 2 months ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• gxiaolab / scAllele
  ☆30Updated 6 months ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆43Updated 9 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆25Updated 9 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆21Updated 2 months ago