☆12Apr 13, 2020Updated 6 years ago
Alternatives and similar repositories for jungle
Users that are interested in jungle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- ☆21Aug 20, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated 3 weeks ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated 2 years ago
- ☆25Mar 3, 2020Updated 6 years ago
- Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"☆18Aug 1, 2023Updated 2 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- Blang's software development kit☆25Nov 26, 2025Updated 8 months ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 3 weeks ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Oct 12, 2024Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated last year
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆37Dec 15, 2020Updated 5 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- A single-cell RNA-seq pipeline☆28Apr 12, 2023Updated 3 years ago
- Single-cell copy number calling and event history reconstruction.☆28May 13, 2026Updated 2 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 5 months ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated 10 months ago
- ☆10Oct 15, 2025Updated 9 months ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs☆38Aug 19, 2024Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Jul 29, 2024Updated 2 years ago
- ☆51Feb 7, 2024Updated 2 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago