Identifying tumor cells at the single-cell level using machine learning
☆51Nov 10, 2024Updated last year
Alternatives and similar repositories for ikarus
Users that are interested in ikarus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jul 17, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆16Oct 18, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆19Aug 29, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆92Jan 19, 2025Updated last year
- cross-species analysis of cell identities, markers and regulations☆12Jul 11, 2025Updated 9 months ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Apr 27, 2026Updated last week
- ☆10Sep 27, 2022Updated 3 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated last month
- A Bayesian model for compositional single-cell data analysis☆195Jan 13, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- ☆41Jun 24, 2025Updated 10 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 2 months ago
- ☆48Apr 18, 2020Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆189Apr 27, 2026Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆392May 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆99Apr 11, 2025Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆44Sep 18, 2025Updated 7 months ago
- A tool for detecting somatic variants in single cell data☆218Sep 15, 2024Updated last year
- Assessing the purity of single cell population☆146Jun 3, 2022Updated 3 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 8 months ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆25Dec 5, 2025Updated 5 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Apr 27, 2026Updated last week
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- ☆280Oct 13, 2025Updated 6 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 3 years ago