DeplanckeLab / ChromatinHDLinks
High-definition modeling of chromatin + transcriptomics data
☆26Updated 9 months ago
Alternatives and similar repositories for ChromatinHD
Users that are interested in ChromatinHD are comparing it to the libraries listed below
Sorting:
- Toolkit for single-cell DNA methylation analysis.☆46Updated last month
- Benchmark of GRNs using the GRETA pipeline☆30Updated last week
- ☆37Updated 10 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆26Updated 9 months ago
- A python package for chromVAR☆32Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- ☆48Updated this week
- Fast motif matching in R☆46Updated last year
- ☆69Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Pipeline to run scE2G☆32Updated 2 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Scripts for using scanpy☆38Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ☆34Updated 6 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- ☆37Updated last year