DeplanckeLab / ChromatinHDLinks
High-definition modeling of chromatin + transcriptomics data
☆26Updated 2 weeks ago
Alternatives and similar repositories for ChromatinHD
Users that are interested in ChromatinHD are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- A python package for chromVAR☆33Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated last week
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Updated 2 years ago
- Scripts for using scanpy☆39Updated 3 months ago
- Fast motif matching in R☆46Updated 2 years ago
- ☆37Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Toolkit for single-cell DNA methylation analysis.☆46Updated 3 weeks ago
- ☆27Updated 9 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- ☆37Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Pipeline to run scE2G☆32Updated this week
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆20Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ACTIONet single-cell analysis framework☆44Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- ☆69Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 3 years ago
- ☆18Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month