DeplanckeLab / ChromatinHDLinks
High-definition modeling of chromatin + transcriptomics data
☆24Updated 2 months ago
Alternatives and similar repositories for ChromatinHD
Users that are interested in ChromatinHD are comparing it to the libraries listed below
Sorting:
- A method for analyzing scATAC-seq experiments.☆32Updated 3 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- A python package for chromVAR☆28Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆35Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆35Updated 4 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated 3 months ago
- Fast motif matching in R☆47Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 7 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆41Updated 3 weeks ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 10 months ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated 2 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last month
- Information-based dimensionality reduction☆29Updated 7 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Scripts for using scanpy☆36Updated 4 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆26Updated 2 months ago
- ☆25Updated last month
- ☆17Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- ☆15Updated 2 months ago
- ☆67Updated last month
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated last year