Alternatives and similar repositories for ChromatinHD

Users that are interested in ChromatinHD are comparing it to the libraries listed below

• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆28Updated 3 weeks ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆31Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆28Updated this week
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 4 months ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆38Updated 2 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• lcmmichielsen / scHPL
  ☆37Updated 8 months ago
• yal054 / epiformer
  ☆26Updated 7 months ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆51Updated last year
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• HYsxe / PRINT
  ☆36Updated last year
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆28Updated 2 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆30Updated 3 weeks ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆43Updated this week
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆29Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆43Updated last year
• mcvickerlab / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 6 months ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 7 months ago
• cellatlas / human
  ☆44Updated last year
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 10 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last week
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆38Updated 3 weeks ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆31Updated 2 years ago