High-definition modeling of chromatin + transcriptomics data
☆26Jan 27, 2026Updated 7 months ago
Alternatives and similar repositories for ChromatinHD
Users that are interested in ChromatinHD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Codes to run deltaSVM models to predict allelic TF binding☆11Apr 5, 2021Updated 5 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmark of GRNs using the GRETA pipeline☆33Jun 9, 2026Updated 3 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆42Mar 20, 2023Updated 3 years ago
- ☆29Dec 10, 2025Updated 9 months ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- Analysis scripts for snMultiome project☆16Dec 12, 2024Updated last year
- ☆13Dec 1, 2021Updated 4 years ago
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- ☆52Mar 22, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆253Jun 9, 2026Updated 3 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆81Updated this week
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆21Apr 14, 2026Updated 5 months ago
- single-cell decorrelated module networks☆34Aug 24, 2024Updated 2 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆18Apr 21, 2023Updated 3 years ago
- Multi-omic velocity inference☆121Oct 23, 2024Updated last year
- ☆27Apr 15, 2025Updated last year
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆39Feb 19, 2026Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆19Aug 17, 2026Updated last month
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated last year
- ☆14May 26, 2020Updated 6 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated last year
- FeatureMAP (Feature-preserving Manifold Approximation and Projection) is an interpratable dimensionality reduction tool.☆21Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- ☆73Nov 21, 2025Updated 10 months ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 11 months ago
- ☆25Aug 20, 2024Updated 2 years ago
- ☆23Jan 20, 2021Updated 5 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- Supplementary files and notebooks to recreate figures.☆23Aug 4, 2026Updated last month