Alternatives and similar repositories for sigflow

Users that are interested in sigflow are comparing it to the libraries listed below

• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆14Updated 2 weeks ago
• Xinglab / rMATS-long
  ☆34Updated this week
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 7 months ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 7 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆23Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 2 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 4 months ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 4 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• bioinform / ecTMB
  ☆18Updated 4 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆34Updated this week
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆40Updated last year
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆21Updated last month
• smshuai / DriverPower
  DriverPower
  ☆26Updated 10 months ago
• zanglab / SICER2
  ☆23Updated 8 months ago
• BIMSBbioinfo / HOT-or-not-examining-the-basis-of-high-occupancy-target-regions
  HOT regions paper
  ☆11Updated 6 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated last week
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• genemine / iread
  iread
  ☆25Updated 4 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆29Updated 3 years ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆24Updated last month
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 3 weeks ago