Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
☆29Oct 12, 2024Updated last year
Alternatives and similar repositories for sigflow
Users that are interested in sigflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 21, 2023Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆98Aug 1, 2024Updated last year
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Mar 17, 2026Updated last week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆84Jun 6, 2025Updated 9 months ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- ☆17Mar 17, 2026Updated last week
- ☆12Apr 13, 2020Updated 5 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last month
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 3 months ago
- ☆10Sep 27, 2022Updated 3 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- A Carpentries-style lesson on RNA-Sequencing☆20May 1, 2023Updated 2 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆486Feb 25, 2026Updated last month
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Jan 28, 2022Updated 4 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Software for hybridization capture bait design☆11Mar 20, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 11 years ago
- R package containing useful functions for mutational signature analysis☆86Mar 16, 2026Updated last week
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆16Dec 30, 2025Updated 2 months ago
- Easy to define segments in y-axis for 'ggplot2'.☆27Oct 6, 2019Updated 6 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆180Mar 7, 2026Updated 2 weeks ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year