ShixiangWang / sigflow
Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
☆26Updated 3 months ago
Alternatives and similar repositories for sigflow:
Users that are interested in sigflow are comparing it to the libraries listed below
- ☆23Updated 3 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 months ago
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- R package wrapping bedtools☆38Updated 4 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Codes and Data for FFPEsig manuscript☆15Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- simplified cellranger for long-read data☆17Updated 4 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 3 weeks ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- a set of NGS pipelines☆24Updated last month
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 weeks ago
- ☆14Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- ☆9Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 3 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆25Updated last month
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago