ShixiangWang / sigflowLinks
Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
☆29Updated last year
Alternatives and similar repositories for sigflow
Users that are interested in sigflow are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- ☆34Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- interactive plots for differential expression analysis☆34Updated 7 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- DriverPower☆26Updated last year
- R package for DNA methylation analysis☆20Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- R package wrapping bedtools☆44Updated 10 months ago
- simplified cellranger for long-read data☆19Updated 5 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- HOT regions paper☆11Updated 6 years ago
- ☆23Updated 11 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆22Updated 4 years ago
- iread☆25Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 5 months ago