amkozlov / cellphy
CellPhy: accurate and fast probabilistic inference of single-cell phylogenies
☆18Updated last year
Alternatives and similar repositories for cellphy:
Users that are interested in cellphy are comparing it to the libraries listed below
- ☆21Updated last month
- ☆23Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- Evolutionary Transcriptomics with R☆41Updated last week
- ☆21Updated 7 months ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- ☆17Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- a set of NGS pipelines☆24Updated this week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Genomic Association Tester☆30Updated last year
- ☆12Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- ☆25Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Reconstruction of focal amplifications with long reads☆17Updated this week
- iread☆23Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- ☆13Updated 7 years ago