CellPhy: accurate and fast probabilistic inference of single-cell phylogenies
☆23Jan 8, 2026Updated 9 months ago
Alternatives and similar repositories for cellphy
Users that are interested in cellphy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- ☆16Mar 8, 2024Updated 2 years ago
- ☆11Sep 27, 2022Updated 4 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- ☆24Oct 15, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆15May 27, 2023Updated 3 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 7 months ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆23Jul 11, 2024Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆21Jul 8, 2026Updated 3 months ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆22Updated this week
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 3 months ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Oct 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 6 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 23, 2026Updated 2 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆35Jul 20, 2026Updated 2 months ago
- ☆16May 13, 2022Updated 4 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆16Apr 7, 2026Updated 6 months ago
- ☆13May 29, 2024Updated 2 years ago
- ☆25Mar 3, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆92Apr 5, 2021Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Sep 18, 2026Updated 3 weeks ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆29Jun 24, 2025Updated last year
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 3 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package to time somatic mutations☆72Dec 12, 2020Updated 5 years ago
- Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.☆18Jun 29, 2026Updated 3 months ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated 11 months ago
- Label elements within user drawn gates☆26Oct 10, 2025Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 8 months ago