Alternatives and similar repositories for cellphy

Users that are interested in cellphy are comparing it to the libraries listed below

• Xinglab / rMATS-long
  ☆33Updated 10 months ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 10 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆40Updated 3 years ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆61Updated 4 months ago
• ferrannadeu / IgCaller
  Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…
  ☆20Updated 2 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆32Updated 2 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• huishenlab / biscuit
  BISulfite-seq CUI Toolkit
  ☆24Updated last month
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆19Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆50Updated 2 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆31Updated 10 months ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆23Updated 2 years ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆19Updated 3 months ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 8 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• wwylab / MuSE
  Somatic point mutation caller
  ☆31Updated 5 months ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated 2 months ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 10 months ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆31Updated 2 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆48Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 5 months ago
• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆29Updated 8 months ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 6 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated this week