YosefLab / CassiopeiaLinks
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
☆97Updated last month
Alternatives and similar repositories for Cassiopeia
Users that are interested in Cassiopeia are comparing it to the libraries listed below
Sorting:
- ☆49Updated last week
- Finding gene expression states in scRNA-seq data☆50Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated 2 months ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- Geometry-preserving random sampling☆95Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- A python package for chromVAR☆33Updated 2 years ago
- ☆37Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆111Updated 2 months ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated 2 weeks ago
- software to detect doublets☆96Updated last year
- ☆62Updated 8 months ago
- Multi-omic velocity inference☆116Updated last year
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- ☆35Updated 10 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Tools for single-cell data processing☆131Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆96Updated 9 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆59Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆37Updated 2 weeks ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated last week
- Population balance analysis☆44Updated 6 years ago