YosefLab / CassiopeiaLinks
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
☆96Updated 2 weeks ago
Alternatives and similar repositories for Cassiopeia
Users that are interested in Cassiopeia are comparing it to the libraries listed below
Sorting:
- Geometry-preserving random sampling☆95Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 weeks ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated this week
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 weeks ago
- ☆37Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆48Updated this week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- A python package for chromVAR☆32Updated 2 years ago
- Multi-omic velocity inference☆113Updated last year
- Toolkit for single-cell DNA methylation analysis.☆45Updated 2 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated last month
- Finding gene expression states in scRNA-seq data☆51Updated last year
- ☆59Updated last year
- software to detect doublets☆95Updated 11 months ago
- Population balance analysis☆44Updated 6 years ago
- ☆59Updated 7 months ago
- Tools for single-cell data processing☆130Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- ☆37Updated 9 months ago
- Pipeline to run scE2G☆32Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆46Updated 6 years ago
- Scripts for using scanpy☆38Updated 2 months ago
- pseudobulking on an AnnData object☆34Updated 9 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi …☆53Updated this week
- ☆35Updated 9 months ago