mmdarmofal / GDD_ENSLinks
Tumor type classifier using cancer genomic panel sequencing data
☆11Updated last year
Alternatives and similar repositories for GDD_ENS
Users that are interested in GDD_ENS are comparing it to the libraries listed below
Sorting:
- Code for paper "A deep profile of gene expression across 18 human cancers"☆30Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 7 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated last year
- ☆17Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆28Updated 8 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 5 months ago
- ☆26Updated 6 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆18Updated 7 months ago
- A Tidy Framework to Hack Gene Expression Signatures☆20Updated 7 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆15Updated 3 weeks ago
- Phenome Exome Association and Correlation Of Key phenotypes☆30Updated 4 years ago
- Time-Course Multi-Omics data integration☆26Updated last year
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- ☆23Updated last year
- Python playground for cell-type-specific biology☆12Updated this week
- An R package for extracting mutational signatures from vcf files☆11Updated 10 months ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆18Updated 2 weeks ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated this week
- ☆24Updated 3 months ago
- Reproducibility notebooks for scPoli☆21Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- ☆14Updated 2 months ago
- ☆22Updated 2 months ago