fmicompbio / adv_scrnaseq_2020Links
Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
☆17Updated 5 years ago
Alternatives and similar repositories for adv_scrnaseq_2020
Users that are interested in adv_scrnaseq_2020 are comparing it to the libraries listed below
Sorting:
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- binned motif enrichment analysis and visualisation☆41Updated last week
- ☆58Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Scripts for using scanpy☆38Updated 6 months ago
- ☆62Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆25Updated 10 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆56Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ☆39Updated 4 years ago
- ☆35Updated 6 months ago
- Fast motif matching in R☆46Updated last year
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- ☆44Updated 10 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ☆34Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ☆35Updated 3 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago