Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
☆17May 29, 2020Updated 5 years ago
Alternatives and similar repositories for adv_scrnaseq_2020
Users that are interested in adv_scrnaseq_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 27, 2022Updated 3 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 9 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆30Updated this week
- a GFA toolkit☆13Oct 4, 2024Updated last year
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Implements several Markov chain Monte Carlo (MCMC) algorithms for the latent Dirichlet allocation (LDA) model☆11Feb 11, 2020Updated 6 years ago
- All the action is on the course webpage -->☆30Nov 12, 2024Updated last year
- Biwhitened PCA☆14Mar 18, 2026Updated last week
- Variant Calling Pipeline in Cromwell/WDL☆22Feb 22, 2020Updated 6 years ago
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆17Apr 27, 2023Updated 2 years ago
- ☆10Oct 15, 2025Updated 5 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- ☆12Apr 13, 2020Updated 5 years ago
- ☆25Apr 29, 2018Updated 7 years ago
- An R package for non-negative and sparse CCA☆14May 1, 2023Updated 2 years ago
- VAEs on Sparse Data☆12Oct 15, 2017Updated 8 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆30Sep 22, 2023Updated 2 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆16Apr 21, 2023Updated 2 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- ☆14Mar 18, 2022Updated 4 years ago
- 1-code framework: docs, C-library, and tools☆25Jan 11, 2026Updated 2 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- ☆36Feb 1, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Oct 10, 2025Updated 5 months ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- Python interface for SIMD Smith-Waterman Library☆38May 18, 2022Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year