WWXkenmo / ICAnetLinks
Independent Component Analysis decipher functional modules for better cell clustering and annotation
☆17Updated 3 years ago
Alternatives and similar repositories for ICAnet
Users that are interested in ICAnet are comparing it to the libraries listed below
Sorting:
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆10Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- ☆39Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆16Updated last year
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- ☆14Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- ☆60Updated last year
- ☆50Updated 5 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- ☆30Updated 6 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year