WWXkenmo / ICAnetLinks
Independent Component Analysis decipher functional modules for better cell clustering and annotation
☆17Updated 3 years ago
Alternatives and similar repositories for ICAnet
Users that are interested in ICAnet are comparing it to the libraries listed below
Sorting:
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆24Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆43Updated 3 months ago
- Single-cell Case Control Analysis☆52Updated last week
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆10Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 9 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆39Updated 3 months ago
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆30Updated 7 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆35Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆56Updated 3 years ago
- ☆24Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- ☆32Updated 10 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year