veltenlab / CloneTracerLinks
This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries
☆26Updated last year
Alternatives and similar repositories for CloneTracer
Users that are interested in CloneTracer are comparing it to the libraries listed below
Sorting:
- ☆32Updated 9 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆39Updated 2 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- ☆14Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆50Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 4 months ago
- ☆51Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- SCDC☆45Updated 4 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- ☆10Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆34Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago