veltenlab / CloneTracer
This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries
☆25Updated 4 months ago
Alternatives and similar repositories for CloneTracer:
Users that are interested in CloneTracer are comparing it to the libraries listed below
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆32Updated 10 months ago
- ☆30Updated last month
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆45Updated 7 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆12Updated 3 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- ☆10Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- ☆12Updated 8 months ago
- ☆13Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆17Updated last year
- ☆16Updated 5 years ago
- cell type specific, trait-associated gene regulation☆20Updated last week
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆18Updated 8 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago