Lineage Tracing by Integrating Mutation and Transcriptomic data
☆13Jun 16, 2020Updated 6 years ago
Alternatives and similar repositories for LinTIMaT
Users that are interested in LinTIMaT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated 11 months ago
- ☆11Sep 27, 2022Updated 4 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆100Jul 23, 2026Updated 2 months ago
- ☆14Jul 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆24Jan 8, 2018Updated 8 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆20Jun 16, 2023Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆39Feb 19, 2026Updated 7 months ago
- ☆29Dec 25, 2023Updated 2 years ago
- ☆13Sep 8, 2020Updated 6 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆15May 27, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆14Mar 12, 2024Updated 2 years ago
- ☆166Mar 20, 2026Updated 6 months ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- PSI-Sigma☆42Nov 10, 2023Updated 2 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- ☆15Mar 13, 2018Updated 8 years ago
- ☆21Aug 20, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 8 months ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 4 months ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated last year
- ☆10Jul 10, 2023Updated 3 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated last month
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- Code for the analysis performed in the paper "Deep learning the cis-regulatory code of chromatin dynamics during cellular reprogramming" …☆17Oct 16, 2025Updated 11 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆21Apr 2, 2026Updated 6 months ago
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- ☆13Apr 13, 2020Updated 6 years ago