jessica1338 / LinTIMaT
Lineage Tracing by Integrating Mutation and Transcriptomic data
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for LinTIMaT
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- ☆41Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆9Updated 6 months ago
- ☆30Updated 7 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆27Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆11Updated 3 years ago
- ☆31Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆11Updated last year
- Code and data sharing of Liu et al. 2023 manuscript☆15Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆27Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- ☆11Updated 4 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆11Updated 3 years ago
- scover☆22Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- ☆20Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆17Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago