lindenb / rbcfLinks
R Bindings for htslib/bcf
☆10Updated last year
Alternatives and similar repositories for rbcf
Users that are interested in rbcf are comparing it to the libraries listed below
Sorting:
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 7 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- ☆22Updated 8 months ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Updated this week
- Unfazed by genomic variant phasing☆27Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 2 months ago
- Structural variant pipeline☆17Updated 5 years ago
- Variant call adjudication☆16Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 4 years ago
- ☆14Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Identification of structural variations☆12Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- Easy genomic regions for short-read variant calling☆36Updated 2 weeks ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last week
- ☆12Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week