lindenb / rbcfLinks
R Bindings for htslib/bcf
☆10Updated last year
Alternatives and similar repositories for rbcf
Users that are interested in rbcf are comparing it to the libraries listed below
Sorting:
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- ☆21Updated 9 months ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14Updated 3 weeks ago
- Unfazed by genomic variant phasing☆27Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- ☆14Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Variant call adjudication☆16Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Detects human contamination in bam files☆16Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- A minimap2 implementation with binseq inputs☆16Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- MEM mapper prototype☆13Updated 4 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆26Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago