Alternatives and similar repositories for perSVade

Users that are interested in perSVade are comparing it to the libraries listed below

• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆73Updated 3 weeks ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated last week
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated last month
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated last month
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated last month
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆41Updated 6 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 2 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated last year
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated last month
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆36Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆46Updated 8 months ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆48Updated 2 months ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆49Updated 7 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆76Updated last week
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆34Updated 2 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated last week
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• celphin / RepeatOBserverV1
  An R package to visualize chromosome scale repeat patterns and predict centromere locations.
  ☆29Updated 7 months ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago