perSVade: personalized Structural Variation detection
☆41Apr 2, 2026Updated 3 months ago
Alternatives and similar repositories for perSVade
Users that are interested in perSVade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆18Sep 16, 2021Updated 4 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆30Aug 1, 2023Updated 2 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆23Mar 26, 2026Updated 3 months ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year
- k-mer similarity analysis pipeline☆24Apr 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- ☆51Aug 27, 2019Updated 6 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- ☆46Apr 18, 2026Updated 3 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Jul 13, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Post-verkko graph and assembly curation in Python.☆21Jul 2, 2026Updated 3 weeks ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- ☆18Jul 13, 2021Updated 5 years ago
- ☆15May 3, 2023Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆196Oct 15, 2025Updated 9 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year