Alternatives and similar repositories for varlens

Users that are interested in varlens are comparing it to the libraries listed below

• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 weeks ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• markrobinsonuzh / CrispRVariants
  ☆25Updated 4 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• favorov / stereogene
  ☆13Updated this week
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆52Updated 7 years ago
• ewels / Labrador
  A web based tool to manage and automate the processing of publicly available datasets.
  ☆40Updated 4 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 8 months ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 2 months ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 9 years ago
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 3 years ago
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆41Updated 9 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• AlexanderDilthey / MHC-PRG
  Population Reference Graphs for the HLA and MHC.
  ☆35Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• xguse / blacktie
  Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline
  ☆26Updated 9 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 8 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 4 years ago