commandline manipulation of genomic variants and NGS reads
☆19Sep 6, 2024Updated last year
Alternatives and similar repositories for varlens
Users that are interested in varlens are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 2 months ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Library for manipulating genomic variants and predicting their effects☆87Apr 22, 2026Updated 2 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆15Oct 27, 2021Updated 4 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆16Feb 23, 2016Updated 10 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 4 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- Bioinformatics Ketrew Pipelines☆28Nov 14, 2021Updated 4 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- 1000 Genomes Project Metadata R Package☆21Oct 27, 2025Updated 6 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Feb 19, 2017Updated 9 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Strongly typed file path and file system operations.☆26Jun 24, 2025Updated 10 months ago
- ☆11Jun 26, 2020Updated 5 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Shiny App for comparison of samples and plotting effect size☆29Apr 9, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- VCF (variant call format) parser☆26Apr 27, 2026Updated last week
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago