Alternatives and similar repositories for GBrowse

Users that are interested in GBrowse are comparing it to the libraries listed below

• mlin / PhyloCSF
  Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
  ☆69Updated 2 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆64Updated 7 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆48Updated 8 months ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 6 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆58Updated 8 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• carringtonlab / TargetFinder
  Plant small RNA target prediction tool
  ☆26Updated 8 years ago
• najoshi / sabre
  ☆63Updated 4 years ago
• jimhester / fasta_utilities
  A collection of scripts developed to interact with fasta, fastq and sam/bam files.
  ☆53Updated 9 years ago
• juliangehring / GMAP-GSNAP
  *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…
  ☆33Updated 10 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆76Updated last year
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• jts / nanopore-paper-analysis
  Code for nanopore paper
  ☆33Updated 10 years ago
• mgymrek / lobstr-code
  lobSTR: a short tandem repeat profiler for next generation sequencing data
  ☆53Updated 2 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• LyonsLab / coge
  CoGe (Comparative Genomics) Platform
  ☆45Updated 3 years ago
• lh3 / fermi
  A WGS de novo assembler based on the FMD-index for large genomes
  ☆74Updated 11 years ago
• bioinfo-ut / GenomeTester4
  A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
  ☆33Updated 2 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• mw55309 / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆48Updated 8 years ago
• BimberLab / DISCVRSeq
  A collection of command line tools for working with sequencing data
  ☆52Updated last month
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆48Updated 3 years ago
• icebert / pblat
  parallelized blat with multi-threads support
  ☆53Updated 9 months ago
• ALLBio / allbiotc2
  Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
  ☆24Updated 11 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆53Updated 7 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 6 years ago