GMOD / GBrowseLinks
the Generic Genome Browser
☆49Updated 2 years ago
Alternatives and similar repositories for GBrowse
Users that are interested in GBrowse are comparing it to the libraries listed below
Sorting:
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆69Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆53Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- Tools for bam file processing☆55Updated 10 years ago
- A collection of scripts developed to interact with fasta, fastq and sam/bam files.☆53Updated 9 years ago
- CoGe (Comparative Genomics) Platform☆45Updated 3 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- ☆63Updated 4 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 11 months ago
- Algorithms to compute DNA complexity☆34Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Updated 8 months ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- parallelized blat with multi-threads support☆53Updated 8 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago