rothlab / chromozoom
ChromoZoom is a fast, fluid web-based genome browser
☆47Updated 3 years ago
Related projects: ⓘ
- A sparse k-mer graph based, memory-efficient genome assembler.☆10Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆24Updated 4 years ago
- 3D Genome Browser☆31Updated 2 years ago
- The command-line interface to GGD☆42Updated last year
- k-mer similarity analysis pipeline☆19Updated last year
- Simple tool to verticalize text delimited files.☆35Updated 4 months ago
- Mapped QC analysis program☆41Updated 6 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 6 years ago
- ☆13Updated 8 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Bring Your Own Bioinformatics☆27Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 6 months ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- cache packages permanently☆12Updated 2 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆41Updated 4 years ago
- Code and files used in teaching and training courses.☆30Updated 7 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆30Updated 5 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 3 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- ☆37Updated 4 years ago
- a wee tool for random access into BGZF files.☆83Updated 6 years ago
- blast, shmlast☆21Updated 3 years ago