e-jorsboe / fastNGSadmixLinks
Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
☆10Updated 10 months ago
Alternatives and similar repositories for fastNGSadmix
Users that are interested in fastNGSadmix are comparing it to the libraries listed below
Sorting:
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- ☆11Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆21Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 2 weeks ago
- CLI to automate Nextflow pipeline testing☆12Updated last week