e-jorsboe / fastNGSadmix
Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
☆10Updated 5 months ago
Alternatives and similar repositories for fastNGSadmix:
Users that are interested in fastNGSadmix are comparing it to the libraries listed below
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 2 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- ☆11Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 10 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- ☆9Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- This is the Haplotypo repository☆20Updated 8 months ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Mutation rate analysis of autosomal loci☆14Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- ☆12Updated 9 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆20Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 7 months ago
- Benchmark structural variant calls against a reference set☆17Updated 3 months ago
- Liftover VCF files☆17Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 6 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week