e-jorsboe / fastNGSadmixLinks
Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
☆10Updated last year
Alternatives and similar repositories for fastNGSadmix
Users that are interested in fastNGSadmix are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆13Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- ☆13Updated 2 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 6 years ago
- ☆11Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- ☆16Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆20Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Toolkit for calling and analyzing de novo STR mutations☆16Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Updated 9 years ago
- Tools for merging Tandem Repeat VCF files☆35Updated 6 months ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- ☆15Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago