e-jorsboe / fastNGSadmix
Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
☆10Updated 6 months ago
Alternatives and similar repositories for fastNGSadmix:
Users that are interested in fastNGSadmix are comparing it to the libraries listed below
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 11 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- ☆12Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆11Updated last year
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- ☆12Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- A transposition caller.☆10Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Segmental duplication detection tool☆13Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆24Updated 5 years ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- This is the Haplotypo repository☆20Updated 9 months ago
- Benchmark structural variant calls against a reference set☆17Updated 4 months ago
- Visualising discordant reads☆15Updated 9 years ago
- ☆15Updated 7 years ago