e-jorsboe / fastNGSadmix
Program for estimating admixture proportions and doing principal component analysis of a single NGS sample
☆10Updated 8 months ago
Alternatives and similar repositories for fastNGSadmix:
Users that are interested in fastNGSadmix are comparing it to the libraries listed below
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated 8 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- defusion☆14Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆15Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆11Updated 2 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- ☆12Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 3 years ago
- ☆12Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆10Updated 4 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆15Updated 7 years ago