antonisdim / haystac
Code repository for the HAYSTAC pipeline
☆13Updated 3 months ago
Alternatives and similar repositories for haystac:
Users that are interested in haystac are comparing it to the libraries listed below
- Simple bacterial assembly and annotation pipeline☆66Updated this week
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- ☆26Updated 3 years ago
- Evolutionary Transcriptomics with R☆41Updated last week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆20Updated 3 months ago
- ☆15Updated last year
- ☆43Updated 9 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- ☆24Updated 7 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆35Updated 9 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- orthology assignment using phylogenetic and network analyses☆46Updated 3 months ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- An R package designed for drawing gene arrow maps☆41Updated last week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated this week
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆26Updated 11 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 weeks ago
- This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data☆9Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆51Updated 2 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago