popitsch / nanopanel2Links
Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
☆11Updated 4 years ago
Alternatives and similar repositories for nanopanel2
Users that are interested in nanopanel2 are comparing it to the libraries listed below
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- ☆32Updated last year
- ☆31Updated 6 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 4 months ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆29Updated last month
- Convert HAL to VG☆23Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆15Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- ☆11Updated last week
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 5 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Identification of conserved non-coding sequences in plants☆31Updated 2 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Updated 13 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Haplotype-aware assembly of complex regions and small genomes☆15Updated last month