popitsch / nanopanel2
Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
☆9Updated 3 years ago
Alternatives and similar repositories for nanopanel2:
Users that are interested in nanopanel2 are comparing it to the libraries listed below
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 9 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆21Updated 7 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆12Updated 2 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 8 months ago
- ☆30Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- Detection and genotyping of structural variants☆18Updated 2 weeks ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- ☆29Updated 4 years ago
- ☆28Updated 6 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 8 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 3 months ago
- ☆33Updated 10 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 10 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago