popitsch / nanopanel2Links
Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
☆11Updated 4 years ago
Alternatives and similar repositories for nanopanel2
Users that are interested in nanopanel2 are comparing it to the libraries listed below
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 2 months ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 2 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated this week
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- ☆28Updated 2 years ago
- ☆33Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- ☆16Updated 4 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- Consensus genome annotation using OMA☆26Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆15Updated 3 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- ☆31Updated 5 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 4 months ago
- Convert HAL to VG☆22Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆15Updated 3 weeks ago