Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
☆11Sep 21, 2021Updated 5 years ago
Alternatives and similar repositories for nanopanel2
Users that are interested in nanopanel2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Oct 30, 2026Updated last week
- python plotly Circos☆10Feb 2, 2024Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆46Jun 24, 2021Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- ☆16Dec 22, 2025Updated 10 months ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 7 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- Multi-sample transcriptome assembly from RNA-Seq☆26Jun 10, 2018Updated 8 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆26Mar 18, 2022Updated 4 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 7 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆37Mar 13, 2022Updated 4 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 8 years ago
- A shiny R application to prune phylogenies in our database or user input and obtain a subtree☆12Nov 18, 2021Updated 4 years ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago