GMOD / jbrowseLinks
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
☆473Updated last week
Alternatives and similar repositories for jbrowse
Users that are interested in jbrowse are comparing it to the libraries listed below
Sorting:
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆713Updated last week
- Java utilities for Bioinformatics☆515Updated last month
- Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)☆295Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆429Updated 8 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆706Updated 2 weeks ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆525Updated 3 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆505Updated 2 months ago
- Source code for JBrowse 2, a modern React-based genome browser☆271Updated this week
- ☆320Updated 5 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 3 months ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Updated 7 years ago
- UCSC Genome Browser source. "beta" is released version / "master" is testing.☆250Updated last week
- Graph-based alignment (Hierarchical Graph FM index)☆523Updated this week
- Haplotype VCF comparison tools☆455Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Updated 3 years ago
- Assemble large genomes using short reads☆328Updated 10 months ago
- ☆301Updated this week
- BEDOPS: high-performance genomic feature operations☆357Updated 9 months ago
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆261Updated last month
- Data and analysis for NA12878 genome on nanopore☆402Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆331Updated 8 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆451Updated last year
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆666Updated 3 months ago
- GFF and GVF specification documents☆219Updated last year
- A genome browser designed for complex structural variants and long reads.☆296Updated 7 months ago
- A quality control analysis tool for high throughput sequencing data☆572Updated 3 weeks ago
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- GFF and GTF file manipulation and interconversion☆313Updated this week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆860Updated 8 months ago
- Interactive web-based genome browser.☆228Updated 6 years ago