GMOD / jbrowseLinks
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
☆472Updated last month
Alternatives and similar repositories for jbrowse
Users that are interested in jbrowse are comparing it to the libraries listed below
Sorting:
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆697Updated this week
- Java utilities for Bioinformatics☆512Updated 3 weeks ago
- C++ API & command-line toolkit for working with BAM data☆429Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated 3 weeks ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆684Updated this week
- ☆290Updated 6 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆511Updated 9 months ago
- Interactive web-based genome browser.☆227Updated 6 years ago
- Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)☆287Updated last month
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- Haplotype VCF comparison tools☆441Updated last year
- Source code for JBrowse 2, a modern React-based genome browser☆252Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆502Updated 2 weeks ago
- Efficient pythonic random access to fasta subsequences☆479Updated this week
- Transcript assembly and quantification for RNA-Seq☆459Updated 2 weeks ago
- GFF and GTF file manipulation and interconversion☆305Updated last year
- ☆317Updated 5 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 7 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- Assemble large genomes using short reads☆323Updated 5 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆323Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago
- BEDOPS: high-performance genomic feature operations☆351Updated 4 months ago
- ☆345Updated 6 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆323Updated 5 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- Data and analysis for NA12878 genome on nanopore☆396Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆255Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆431Updated 3 weeks ago