lh3 / samtoolsLinks
This is *NOT* the official repository of samtools.
☆47Updated 7 years ago
Alternatives and similar repositories for samtools
Users that are interested in samtools are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- ☆78Updated 11 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆41Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last week
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆47Updated 4 years ago
- Find all significant local alignments between reads☆141Updated 11 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- PHAST☆73Updated this week
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Same species annotation lift over pipeline.☆97Updated last year