lh3 / samtools
This is *NOT* the official repository of samtools.
☆47Updated 7 years ago
Alternatives and similar repositories for samtools:
Users that are interested in samtools are comparing it to the libraries listed below
- scripts to parse IrysView output☆39Updated 9 years ago
- ☆78Updated 11 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- ABRA2☆92Updated 2 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 7 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- ☆89Updated 3 years ago
- Find all significant local alignments between reads☆141Updated 9 months ago
- Bayesian genotyper for structural variants☆129Updated 4 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- PHAST☆72Updated this week
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago