naim-panjwani / LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
☆9Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for LocusFocus
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- ☆17Updated last week
- Fine-mapping with infinitesimal effects☆14Updated 7 months ago
- A tool to plot significant regions of GWAS☆28Updated last year
- Cross-population fine-mapping☆26Updated last week
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- RNA-seq analysis scripts☆15Updated 2 years ago
- GWAS genetics Fine-mapping method☆16Updated 3 weeks ago
- Create Regional Association Plots☆10Updated 3 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 7 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- ☆10Updated 2 years ago
- ☆19Updated last month
- ☆18Updated 3 weeks ago
- TWAS-pipeline☆21Updated 3 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆12Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- Interactive eQTL visualizations☆13Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated 3 months ago
- An R package for generating comparative regional association plots☆18Updated 4 years ago
- Whole genome workflows☆12Updated last year
- PredictDB Pipeline for GTEx v7 data☆18Updated 2 years ago
- GWAS genetics Fine-mapping method☆11Updated 5 months ago
- Multi-Omic Strategies for TWAS☆12Updated last year
- ☆9Updated 4 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆15Updated 9 months ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago