naim-panjwani / LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
☆9Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for LocusFocus
- ☆17Updated last week
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Fine-mapping with infinitesimal effects☆14Updated 8 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆13Updated 2 years ago
- GWAS genetics Fine-mapping method☆18Updated last month
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- ☆19Updated last month
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 2 weeks ago
- Create Regional Association Plots☆10Updated 3 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- A tool to plot significant regions of GWAS☆29Updated last year
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆12Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Cross-population fine-mapping☆27Updated 2 weeks ago
- TWAS-pipeline☆21Updated 3 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated last week
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated last week
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- Readme☆10Updated 4 years ago
- Integration of TWAS and Colocalization Analysis☆13Updated 3 weeks ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- An interactive graphical illustration of genetic associations and their biological context☆15Updated 8 months ago
- Interactive eQTL visualizations☆13Updated last year
- An R package for creating ggplot2 based miami plots.☆16Updated 8 months ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Updated 3 weeks ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago