hawkjo / SDRrangerLinks
☆12Updated 10 months ago
Alternatives and similar repositories for SDRranger
Users that are interested in SDRranger are comparing it to the libraries listed below
Sorting:
- a minimal, scriptable genome browser for python☆52Updated 11 months ago
- ☆16Updated 10 months ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆20Updated last month
- Container class to represent genomic locations and support genomic analysis☆25Updated last week
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 6 months ago
- ☆38Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Updated this week
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Utilities for large scale distributed single cell data processing☆24Updated 4 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- ☆11Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- python implementation of the PAGE algorithm☆18Updated last year
- A performant scientific image visualization system.☆36Updated last month
- Convert bioinformatics file formats to Zarr☆41Updated 6 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆37Updated 3 months ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated 2 years ago
- Perturb-seq analysis package☆16Updated last year
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆61Updated this week
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- Modular job submitter for arbitrary pipelines or commands.☆24Updated 3 weeks ago
- script + metadata = standalone component☆44Updated last week
- A fast dataloader for bigwig files made for machine learning☆28Updated 2 weeks ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- A Python package for gene network analysis☆32Updated 3 years ago