hawkjo / SDRrangerLinks
☆12Updated 9 months ago
Alternatives and similar repositories for SDRranger
Users that are interested in SDRranger are comparing it to the libraries listed below
Sorting:
- a minimal, scriptable genome browser for python☆51Updated 10 months ago
- ☆16Updated 10 months ago
- Container class to represent genomic locations and support genomic analysis☆25Updated last week
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆14Updated 3 weeks ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆36Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Utilities for large scale distributed single cell data processing☆24Updated 3 months ago
- Bam to Pandas DataFrame, quickly☆13Updated 6 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆61Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 4 months ago
- A performant scientific image visualization system.☆36Updated 2 weeks ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- ☆11Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- Automatically annotate cell types, consistently across samples.☆16Updated this week
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- A fast dataloader for bigwig files made for machine learning☆28Updated 2 weeks ago
- LongSom tool for long-reads☆11Updated 5 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Perturb-seq analysis package☆15Updated last year
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆77Updated this week