Alternatives and similar repositories for SDRranger

Users that are interested in SDRranger are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 8 months ago
• COMBINE-lab / pyroe
  ☆16Updated 7 months ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 5 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 3 years ago
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆38Updated 3 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 3 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆24Updated last week
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• koesterlab / microphaser
  ☆12Updated last year
• kaizhang / anndata-rs
  ☆34Updated last week
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆18Updated last year
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last month
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 4 years ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 5 months ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆135Updated 2 weeks ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 4 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 5 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated last week
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆10Updated last week
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated last week
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago