Alternatives and similar repositories for SDRranger:

Users that are interested in SDRranger are comparing it to the libraries listed below

• COMBINE-lab / pyroe
  ☆16Updated 2 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago
• kaizhang / anndata-rs
  ☆31Updated 2 months ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆20Updated last week
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated last week
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 10 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆27Updated 3 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 4 years ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 4 years ago
• koesterlab / microphaser
  ☆12Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆35Updated this week
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last month
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆21Updated last year
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 9 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆48Updated 3 weeks ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆44Updated this week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated this week
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆13Updated this week