showteeth / GEfetch2RLinks
GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
☆36Updated 5 months ago
Alternatives and similar repositories for GEfetch2R
Users that are interested in GEfetch2R are comparing it to the libraries listed below
Sorting:
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆48Updated last year
- ☆37Updated last year
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆42Updated 4 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- ☆25Updated 3 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Tools for assessing clustering robustness☆25Updated this week
- R package for Flexible dot plots☆29Updated 3 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- ☆22Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆12Updated last year
- Pseudotime Analysis for Bulk Data☆16Updated last year
- ☆19Updated 4 months ago
- ☆47Updated 5 years ago
- ☆15Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago