GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
☆41May 24, 2026Updated last month
Alternatives and similar repositories for GEfetch2R
Users that are interested in GEfetch2R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- ☆30Apr 5, 2025Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- List of Spatial Transcriptomics related Tools organized per category☆182Updated this week
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 5 years ago
- ☆10Dec 15, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated 2 years ago
- E2E (Easy to Ensemble) is a novel R package designed to provide a comprehensive and flexible framework for ensemble machine learning, spe…☆24Mar 19, 2026Updated 3 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated last month
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 10 months ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆11Sep 16, 2022Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated last year
- Merge fastq files split over lanes☆20Feb 13, 2018Updated 8 years ago
- Create Regional Association Plots☆13May 27, 2026Updated last month
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆272Updated this week
- ☆224Jun 13, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ggpie - A ggplot2 extension to create pie, donut and rose pie plot☆50Oct 30, 2023Updated 2 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- ☆19Jun 5, 2024Updated 2 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- 🧬 Gene analysis toolkit based on R☆61Jan 6, 2025Updated last year
- ☆26Jan 9, 2024Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 4 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Nov 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- ☆16May 7, 2023Updated 3 years ago
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆88Jun 22, 2026Updated last week
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- R Deep Learning Projects, published by Packt☆22Jan 30, 2023Updated 3 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Cell type pipes for R☆53Jan 27, 2024Updated 2 years ago