drewvoigt10 / cellcuratoR
sharing interactive single cell gene expression visualizations from Seurat
☆10Updated last year
Alternatives and similar repositories for cellcuratoR:
Users that are interested in cellcuratoR are comparing it to the libraries listed below
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆29Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Updated 9 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- GLASS consortium☆13Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆12Updated 5 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆18Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆17Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆17Updated last year
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 8 months ago