drewvoigt10 / cellcuratoRLinks
sharing interactive single cell gene expression visualizations from Seurat
☆10Updated 2 years ago
Alternatives and similar repositories for cellcuratoR
Users that are interested in cellcuratoR are comparing it to the libraries listed below
Sorting:
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- ☆29Updated 2 years ago
- ☆13Updated 10 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated last week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated 11 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Landscape Single Cell Entropy☆21Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- ☆18Updated last year
- ☆18Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆34Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago