sharing interactive single cell gene expression visualizations from Seurat
☆13May 18, 2023Updated 3 years ago
Alternatives and similar repositories for cellcuratoR
Users that are interested in cellcuratoR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification☆15Oct 10, 2026Updated last week
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆19Jan 10, 2024Updated 2 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 6 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour hete…☆11Sep 12, 2017Updated 9 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- ☆16Apr 29, 2020Updated 6 years ago
- R package for the analysis of single cell virology growth curves☆10Jan 31, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- ☆23Sep 8, 2023Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 5 years ago
- FastCAR is an R package for Fast Correction of Ambient RNA in droplet based single cell sequencing data☆12Jun 8, 2020Updated 6 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆19Mar 16, 2020Updated 6 years ago
- R package for analysis of single-cell data using graphs☆11Jun 8, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆41Jan 14, 2024Updated 2 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 11 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- ☆16Jul 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SCassist : An AI Based Workflow Assistant for Single-Cell Analysis☆33Aug 22, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 8 months ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆43May 24, 2026Updated 4 months ago
- DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in s…☆12May 26, 2021Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆34Nov 9, 2019Updated 6 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆114Sep 17, 2026Updated last month