BMCV / galaxy-image-analysis
Galaxy tools for image analysis
☆17Updated last week
Alternatives and similar repositories for galaxy-image-analysis:
Users that are interested in galaxy-image-analysis are comparing it to the libraries listed below
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Updated 5 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- biotoolsSchema : Tool description data model for computational tools in life sciences☆37Updated last year
- Python project containing Ice remoting code for OMERO☆23Updated 2 weeks ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆12Updated last year
- OME model (specification, code generator, implementation)☆14Updated last month
- Sphinx-based documentation for the Open Microscopy Environment☆22Updated 2 weeks ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆33Updated this week
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Python API and Jupyter widget for Vitessce☆44Updated this week
- ☆14Updated this week
- Deployment infrastructure for the Image Data Resource☆13Updated 2 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.☆18Updated last month
- Minimum Information about Tissue Imaging☆20Updated last year
- An OMERO.web app for creating Figures from images in OMERO☆17Updated 2 weeks ago
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Updated 4 years ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated last month
- This repo is for the metadata schemas associated with the HCA☆67Updated last week
- ☆15Updated 7 months ago
- X things you should take into consideration if you code for big data analysis☆23Updated 6 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 3 weeks ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 5 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 weeks ago
- ☆35Updated last week
- List of tools included in https://usegalaxy.eu☆26Updated this week
- Curated metadata for all studies published in the Image Data Resource☆16Updated last week