Alternatives and similar repositories for galaxy-image-analysis

Users that are interested in galaxy-image-analysis are comparing it to the libraries listed below

• bgruening / docker-galaxy-imaging
  Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)
  ☆12Updated 6 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated this week
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• bio-tools / biotoolsSchema
  biotoolsSchema : Tool description data model for computational tools in life sciences
  ☆39Updated 3 weeks ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 10 months ago
• ome / ome-model
  OME model (specification, code generator, implementation)
  ☆15Updated 2 months ago
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆67Updated 2 weeks ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆15Updated last month
• glencoesoftware / webinar-notebooks
  Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar
  ☆13Updated last year
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆41Updated last week
• ome / omero-figure
  An OMERO.web app for creating Figures from images in OMERO
  ☆17Updated last week
• cubimedrub / macworp
  Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.
  ☆19Updated last month
• Novartis / Jenkins-LSCI
  Jenkins for Life Science Continuous Integration
  ☆12Updated 8 years ago
• fair-research / bdbag
  Big Data Bag Utilities
  ☆51Updated last week
• haniffalab / webatlas-app
  An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
  ☆14Updated last year
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 3 years ago
• galaxyproject / ephemeris
  Library for managing Galaxy plugins - tools, index data, and workflows.
  ☆29Updated 2 weeks ago
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆40Updated last week
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆54Updated last week
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• mobie / mobie-viewer-fiji
  ☆39Updated 3 weeks ago
• ga4gh / task-execution-schemas
  ☆91Updated 2 weeks ago
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆22Updated this week
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• ncihtan / data-models
  Schema.org Data Models for HTAN
  ☆15Updated 2 weeks ago