VasylVaskivskyi / microalignerLinks
Image registration (alignment) software for large microscopy images
☆25Updated 2 years ago
Alternatives and similar repositories for microaligner
Users that are interested in microaligner are comparing it to the libraries listed below
Sorting:
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Track and lineage visualization with btrack and Napari☆46Updated 3 weeks ago
- Interactive visualization of spatial omics data☆70Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Command-line client for Fractal☆47Updated this week
- ☆34Updated last year
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- A plugin to visualise 3D spatial single cell omics☆21Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- Python API and Jupyter widget for Vitessce☆56Updated last week
- Threshold independent detection and localization of diffraction-limited spots.☆37Updated 2 years ago
- Piecewise alignment for layers of mosaics☆29Updated last month
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Minimum Information about Tissue Imaging☆20Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- MethodsJ2☆14Updated 3 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 2 weeks ago