Alternatives and similar repositories for microaligner

Users that are interested in microaligner are comparing it to the libraries listed below

• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 11 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆46Updated 3 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆70Updated this week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• KerenLab / CellSighter
  ☆34Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 5 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆40Updated this week
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 2 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 4 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 4 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆63Updated 5 months ago
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆21Updated last month
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated last year
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated last week
• BBQuercus / deepBlink
  Threshold independent detection and localization of diffraction-limited spots.
  ☆37Updated 2 years ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated last month
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆11Updated last month
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 8 months ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 2 years ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆33Updated last week
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆17Updated 2 weeks ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆22Updated 2 weeks ago