VasylVaskivskyi / microaligner
Image registration (alignment) software for large microscopy images
☆25Updated last year
Alternatives and similar repositories for microaligner:
Users that are interested in microaligner are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Interactive visualization of spatial omics data☆53Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- ☆32Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 7 months ago
- QuPath extension for Cellsparse☆18Updated this week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 weeks ago
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago
- ☆29Updated last year
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- Find profile pairs and compute metrics between them.☆12Updated last month
- Raw format to OME-TIFF converter☆51Updated 2 months ago
- ☆17Updated 2 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 8 months ago