Image registration (alignment) software for large microscopy images
☆27Oct 15, 2023Updated 2 years ago
Alternatives and similar repositories for microaligner
Users that are interested in microaligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 weeks ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unix table column and row manipulation using column names☆12Aug 4, 2026Updated 2 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Aug 10, 2026Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Speed up coding/extending image analysis in Python.☆37May 9, 2026Updated 3 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- This is PyFocus, a Python package that provides high-level functions and an user interface to perform full vectorial calculations of the …☆17Oct 31, 2023Updated 2 years ago
- 1d plotting in napari-based canvas.☆25Updated this week
- Fast array utilities☆15Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆45Jun 7, 2026Updated 2 months ago
- ☆33May 2, 2025Updated last year
- Linking napari layers with Matplotlib plots☆45Jul 1, 2026Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆23Apr 1, 2025Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated last year
- ☆20Apr 6, 2022Updated 4 years ago
- ☆18Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆131Aug 11, 2026Updated last week
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆23Aug 7, 2026Updated last week
- A napari plugin to view and edit layer metadata☆13Aug 11, 2026Updated last week
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated 3 months ago
- GPU accelerated 3D image deconvolution using CUDA☆39Jul 18, 2024Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆90Aug 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated 2 years ago
- Deep Zoom Plate Viewer for microscopy images☆18Jul 21, 2026Updated 3 weeks ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆245Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 11 months ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆15Nov 3, 2025Updated 9 months ago
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated last week