VasylVaskivskyi / microaligner
Image registration (alignment) software for large microscopy images
☆24Updated last year
Alternatives and similar repositories for microaligner:
Users that are interested in microaligner are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 4 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated 11 months ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Interactive visualization of spatial omics data☆51Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆31Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆18Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆21Updated this week
- A relabeling tool for tiled segmentation with Dask☆15Updated 5 months ago
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- Toolbox for the analysis of smFISH images.☆59Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- ☆17Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- Command-line client for Fractal☆45Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- The 2023 version of cellPLATO☆14Updated 4 months ago
- Microsopic Image Analyzer (MIA)☆29Updated 11 months ago
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- Deep learning based spot detection for FISH images.☆21Updated 7 months ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week