GPU-based 3D non-rigid volumetric registration
☆49Aug 26, 2025Updated 11 months ago
Alternatives and similar repositories for warpfield
Users that are interested in warpfield are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆130Updated this week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Build unbiased anatomical templates from individual images☆13Aug 5, 2026Updated last week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read and write files from the BrainGlobe neuroanatomy suite☆15Aug 4, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- A pipeline built on napari that enables segmentation, detection, and tracking of animals in behavioral setups.☆17Aug 6, 2026Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated last month
- ☆10Mar 15, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Aug 7, 2026Updated last week
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Anatomical space conventions made easy.☆12Aug 4, 2026Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- ☆11Oct 21, 2025Updated 9 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆30Aug 4, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An introduction to OME-Zarr for big bioimaging data☆27Updated this week
- Tools for distributed alignment of massive images☆95Updated this week
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated last year
- A Python package to download neuronal morphologies☆17Aug 3, 2026Updated last week
- Re-usable GitHub Action scripts☆14Jul 29, 2026Updated 2 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Block-wise operations for large nD volumes☆45Updated this week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆45Jun 7, 2026Updated 2 months ago
- High quality visualization for volumetric image data☆63Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A flexible Python-based GUI for stereotaxic experiment planning.☆13Updated this week
- Derotate images acquired via multiphoton calcium imaging☆17Aug 3, 2026Updated last week
- Fancier logging with python.☆16Aug 6, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated last month
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 3 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 11 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago