A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
☆119Mar 9, 2026Updated 2 months ago
Alternatives and similar repositories for CellSeg3D
Users that are interested in CellSeg3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2022] DMAP: a Distributed Morphological Attention Policy for Learning to Locomote with a Changing Body☆20May 9, 2026Updated last week
- ☆54Jun 27, 2025Updated 10 months ago
- Cell tracking and segmentation software☆177May 1, 2026Updated 2 weeks ago
- [ECCV 2024] "Elucidating the Hierarchical Nature of Behavior with Masked Autoencoders"☆28Nov 13, 2025Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆125Feb 5, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- We turn natural language descriptions of behaviors into machine-executable code☆238Jun 30, 2025Updated 10 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 3 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- [ICCV 2023] Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity☆102May 23, 2024Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆92Mar 24, 2026Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- a module for kinematic analysis of deeplabcut outputs☆154Dec 13, 2023Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Apr 10, 2023Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90May 8, 2026Updated last week
- Segment Anything for Microscopy☆680Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- dask empowered fast4dreg☆16Mar 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆61Updated this week
- 💍☆26Feb 3, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 4 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆157Jan 11, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 4 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- ☆12Feb 23, 2026Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated last month
- A template repo used to make new napari plugins☆37May 1, 2026Updated 2 weeks ago