AdaptiveMotorControlLab / CellSeg3DLinks
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
☆106Updated last month
Alternatives and similar repositories for CellSeg3D
Users that are interested in CellSeg3D are comparing it to the libraries listed below
Sorting:
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated last month
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- ☆45Updated 5 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Standalone cellfinder cell detection algorithm☆20Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆24Updated 2 weeks ago
- ☆18Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Brainways☆21Updated 2 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated last week
- ☆37Updated 2 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆138Updated 2 weeks ago
- Automated 3D cell detection in very large images☆219Updated 2 weeks ago
- ☆34Updated 6 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ABBA, controlled from python☆15Updated 2 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 2 weeks ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 3 weeks ago
- Cell tracking and segmentation software☆156Updated last week
- ☆23Updated 4 months ago
- ☆18Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated 11 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago