4DNucleome / PartSegLinks
Tool for segmentation in bioimaging
☆35Updated this week
Alternatives and similar repositories for PartSeg
Users that are interested in PartSeg are comparing it to the libraries listed below
Sorting:
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Speed up coding/extending image analysis in Python.☆36Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- Cookiecutter for napari plugins☆71Updated last year
- Command-line client for Fractal☆49Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- native Python dataclasses for the OME data model☆65Updated 3 weeks ago
- A template repo used to make new napari plugins☆31Updated this week
- ☆36Updated last year
- Easily read and write ome-tiff images in python☆28Updated last year
- A napari plugin for zarr backed OME-NGFF images☆43Updated 2 weeks ago
- ☆51Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated this week
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- High quality visualization for volumetric image data☆55Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- Gamified image segmentation quality estimation☆19Updated 9 months ago
- ☆22Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- GPU-accelerated Image Processing library for Python☆53Updated last month
- An Ilastik-like interactive pixel classifier.☆16Updated last year