Alternatives and similar repositories for PartSeg

Users that are interested in PartSeg are comparing it to the libraries listed below

• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated 3 weeks ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆56Updated 11 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆44Updated 5 months ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• rosalindfranklininstitute / RedLionfish
  ☆35Updated last year
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated 2 weeks ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 3 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆52Updated 5 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆70Updated 11 months ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆68Updated last month
• mobie / mobie-viewer-fiji
  ☆39Updated last week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆86Updated 3 weeks ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆27Updated last week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 7 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated this week
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆27Updated last year
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆18Updated 5 months ago
• brisvag / napari-label-interpolator
  ☆13Updated last year
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆24Updated 6 months ago
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 6 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 2 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 3 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆61Updated last week
• haesleinhuepf / napari-assistant
  ☆32Updated 5 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year