juglab / featureforestLinks
A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier
☆17Updated 3 weeks ago
Alternatives and similar repositories for featureforest
Users that are interested in featureforest are comparing it to the libraries listed below
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- Spotiflow plugin for napari☆12Updated last month
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆34Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- ☆11Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- dask empowered fast4dreg☆11Updated 7 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆16Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- Annotate microscopy images for CNN classifier☆11Updated 3 years ago
- Python libraries for loading, running and packaging bioimage.io models☆32Updated 2 weeks ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 9 months ago
- ☆38Updated last week
- ☆51Updated 2 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 3 months ago
- Particle tracking by solving linear assignment problem.☆53Updated last month
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆23Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆13Updated this week
- StarDist plugin for napari☆38Updated 10 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago