PrincetonUniversity / lightsheet_helper_scriptsLinks
☆11Updated 2 years ago
Alternatives and similar repositories for lightsheet_helper_scripts
Users that are interested in lightsheet_helper_scripts are comparing it to the libraries listed below
Sorting:
- ABBA, controlled from python☆18Updated 2 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- ☆46Updated 5 years ago
- ☆19Updated 3 years ago
- The framework for quantification of neuronal anatomy☆55Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- Tools for distributed alignment of massive images☆92Updated last week
- ☆18Updated 3 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last week
- COmmon COordinate FRAMEwork in R☆38Updated 5 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Anatomical space conventions made easy.☆12Updated this week
- ☆11Updated 2 months ago
- Brainways☆22Updated 5 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆93Updated 4 years ago
- ☆34Updated 8 months ago
- Voltage imaging analysis in python☆10Updated 4 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 2 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆24Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆23Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆138Updated last month