PrincetonUniversity / lightsheet_helper_scriptsLinks
☆11Updated last year
Alternatives and similar repositories for lightsheet_helper_scripts
Users that are interested in lightsheet_helper_scripts are comparing it to the libraries listed below
Sorting:
- ABBA, controlled from python☆13Updated 3 months ago
- ☆11Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆20Updated last year
- ☆18Updated 3 years ago
- ☆18Updated 3 years ago
- Anatomical space conventions made easy.☆10Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- ☆34Updated last month
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- ☆45Updated 5 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- BIRDS plug-in on Fiji and attached jar package☆19Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Tools for distributed alignment of massive images☆82Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 3 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- Brainways☆18Updated last month
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 3 months ago
- ☆8Updated 3 years ago
- Lectures for a napari training course☆50Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago