Teaching materials and outline for the Pasteur Bioimage Analysis vour
☆16Jun 2, 2025Updated 11 months ago
Alternatives and similar repositories for Pasteur-BioImage-Analysis-Course-2025
Users that are interested in Pasteur-BioImage-Analysis-Course-2025 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dask empowered fast4dreg☆16Mar 11, 2026Updated 2 months ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 7 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆49Updated this week
- ☆15Updated this week
- ☆15Apr 1, 2026Updated last month
- A python package for fitting splines.☆23May 8, 2026Updated 2 weeks ago
- ☆14Jan 27, 2024Updated 2 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆21May 10, 2026Updated last week
- Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.☆27Mar 10, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Multiscale simulation of multi-cellular system☆11May 15, 2026Updated last week
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆22Nov 24, 2025Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Apr 21, 2025Updated last year
- StarDist plugin for ImageJ☆31May 9, 2022Updated 4 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 6 months ago
- ☆17Jul 30, 2024Updated last year
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41May 14, 2026Updated last week
- A template repo used to make new napari plugins☆37May 1, 2026Updated 3 weeks ago
- Implementation of ThinPlateSpline☆36Feb 12, 2026Updated 3 months ago
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆116May 15, 2026Updated last week
- ☆13Mar 26, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆83Feb 3, 2026Updated 3 months ago
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 3 months ago
- Fast implementation of ThinPlateSpline with PyTorch☆40Feb 12, 2026Updated 3 months ago
- Pythonic and fast assignment problem solver (Supports sparse solving)☆15Oct 17, 2025Updated 7 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- ☆26Jun 17, 2025Updated 11 months ago