Teaching materials and outline for the Pasteur Bioimage Analysis vour
☆17Jun 2, 2025Updated last year
Alternatives and similar repositories for Pasteur-BioImage-Analysis-Course-2025
Users that are interested in Pasteur-BioImage-Analysis-Course-2025 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 3 months ago
- GPU-accelerated Image Processing library for Python☆65Updated this week
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- dask empowered fast4dreg☆17Mar 11, 2026Updated 6 months ago
- ☆15Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Sep 7, 2026Updated 2 weeks ago
- GPU-accelerated Image Processing library for C++☆16Updated this week
- Browse, share, and publish OME-Zarr data☆30Updated this week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆27Sep 11, 2026Updated last week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 9 months ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆134Sep 6, 2026Updated 2 weeks ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 10 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- Source materials for a textbook on AI in Microscopy☆16Updated this week
- ImageJ macros and scripts written at the imaging facility MRI☆45Jul 23, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 9 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A python package for fitting splines.☆24Jul 27, 2026Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Aug 7, 2026Updated last month
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆28Updated this week
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Aug 11, 2026Updated last month
- ilastik plugin for napari☆15Mar 2, 2026Updated 6 months ago
- A fast & modular Python framework for biological object tracking in 2D and 3D microscopy.☆25Aug 25, 2026Updated 3 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆36Updated this week
- ☆14Jan 27, 2024Updated 2 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago